Expression visualisation for genes of the CAGE macrophage activation and M.tb infection experiment PMID:25678556.
A gene can have several promoter regions. Here we show expression for individual promoters and summed expression over all promoters. To derive a single expression value for a gene, the expression (normalised tags-per-million counts) of each promoter of the gene was averaged over replicates and afterwards all promoter expression values summed. All expression values were loglike-transformed log(TPM+1) for representation purposes. The gene to promoter association was done by proximity (500bp) of CAGE-promoters to ENSEMBL genes.
The database contains 10808 genes.
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